I'm using my daughters phone and we restored it but the app updates keep coming up with her login and password even though i'm signed in with mine.
Any help would be appreciated
Apps are keyed to the specific AppleID used to purchase them. In order to prevent updates requiring your daughter's password, you will need to either purchase the apps again using your own ID, or use her ID.
But that would mean he would have to purchase any paid for apps (which would be the right thing to do). Or he could wait till iOS 8 comes out and use the new family sharing feature that's included in it.